PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00880.1_g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 330aa    MW: 36683 Da    PI: 7.5782
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00880.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.11.9e-15257281226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ktelC+ +++tG C+yGd+C+FaHg
  Rsa1.0_00880.1_g00014.1 257 KTELCNKWQQTGACPYGDNCQFAHG 281
                              9***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.5E-19250288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-11253287IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-9255282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765255283IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-12257281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-12289322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-9289324IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5293320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972293321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEKAASTVTD PACVVTALNS PPPPLSPQSD KSVTKQHQED FAASFASLYN SIFSPESQFP  60
DSLSLSPSPP PYSSSSPPAR LAVLDAATEH RLRQASLILE YDELNEHYEI CLSRLQSLMT  120
DLDSLRREND ALRQENVDLL KLIHISASSS SSSSVSPPPF RNRHQISDFG SHGDTGAYKH  180
RRPVRSSDPE RNSLPRSISV RSPGYLKMMN QGSHGYGGAS RQTSQLGSDS VTQKVCVPTK  240
GERDALEVEV YRQGMTKTEL CNKWQQTGAC PYGDNCQFAH GIDELRPVIR HPRYKTEVCR  300
MIVTGATCPY GHRCHFRHSL TEQERMLLTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-21257322570Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013699292.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_013699291.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_013699290.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_013699289.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ9C9N31e-127C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A078IPB90.0A0A078IPB9_BRANA; BnaC06g27780D protein
STRINGBra004189.1-P1e-176(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-122C3H family protein